Algorithm release 0.8.5
This release utilizes the v.2025-02-07 version of the MOAlmanac database. Cancer Gene Census is also no longer required to run moalmanac. The interpreter version was increased to 0.8.5.
Algorithm¶
Posts are organized into categories for ease of navigation:
- Algorithm - developments to the interpretation algorithm implemented in Python.
- Announcement - general news related to the Molecular Oncology Almanac.
- Annual newsletters - annual newsletters that recap updates.
- Database - changes and additions to the underlying knowledge base.
- Release - aggregated release notes from GitHub releases (serving as the project changelog).
Algorithm release 0.8.4
This release utilizes the v.2025-02-07 version of the MOAlmanac database. Both COSMIC and ExAC are now no longer required to run moalmanac. The interpreter version was increased to 0.8.4.
Algorithm release 0.8.3
This release utilizes the v.2025-02-07 version of the MOAlmanac database. It includes a fix to a bug that prevented HTML report generation. Specifically, in rare circumstances, the columns sensitive_score_bin_map, resistance_score_bin_map, and prognostic_score_bin_map were not added to the data object for actionable variants, which are used to sort report tables.
Algorithm release 0.8.2
This release utilizes the v.2025-02-07 release of the underlying MOAlmanac database. The codebase now supports Python 3.13 with no warnings produced, although we will continue officially using 3.12 for the time being.
Algorithm release 0.8.1
This release utilizes version 2025-02-07 of the underlying moalmanac database and contains changes from several pull requests: #32, #33, #35, and #36.
Algorithm release 0.8.0
This release utilizes the v.2024-12-05 version of the underlying database and contains changes from several pull requests: #27, #28, #29, #30, #31.
Algorithm release 0.7.2
This release utilizes the v.2024-10-03 release of the underlying MOAlmanac database and otherwise fixes two bugs present in Release 0.7.1. This release incorporates pull requests https://github.com/vanallenlab/moalmanac/pull/23 and https://github.com/vanallenlab/moalmanac/pull/24.
Algorithm release 0.7.1
This release utilizes the v.2024-04-11 release of the underlying MOAlmanac database and primarily focuses on adding logging to MOAlmanac and refactoring the codebase to remove the datasources/ directory from the application folder. It incorporates changes from two pull requests: https://github.com/vanallenlab/moalmanac/pull/21 and https://github.com/vanallenlab/moalmanac/pull/22.
Algorithm release 0.6.0
This release utilizes the v.2024-04-11 release of the underlying MOAlmanac database and primarily focuses on supporting Python 3.12. It incorporates changes from two pull requests: https://github.com/vanallenlab/moalmanac/pull/18 and https://github.com/vanallenlab/moalmanac/pull/19.
Algorithm release 0.5.0
This release utilizes the v.2023-11-09 release of the underlying MOAlmanac database and incorporates changes from three pull requests: #15: Added AIP to hereditary cancers gene list, #16: Update db nov 2023, and #17: Revise handling of COSMIC mutational signatures.