Dereferenced schemas¶
Records as written to moalmanac-db's dereferenced/ files and served by the API, with foreign keys replaced by the records they point to.
Generated from moalmanac-db at commit e8179c4.
| Schema | Description |
|---|---|
| Agent | An organization or person that publishes documents or contributes to records. |
| Allele | A VRS Allele with its SequenceLocation embedded. The referenced hgvs.* keys become expressions and the state_* keys become state. |
| Biomarker | A Cat-VRS CategoricalVariant whose allele, location, genes, function, and copy change are shaped into constraints. Root type Biomarker with one subtype per biomarker_type extension value. |
| BiomarkerCriterion | Interim link between a proposition and a biomarker (a draft Cat-VRS categorical variant criterion), with the biomarker embedded as subject. |
| Coding | A code within a coding system, e.g. oncotree:BRCA or ncit:C97660. |
| Contribution | A dated contribution by an agent, with the agent embedded as contributor. |
| CopyChange | A copy change term, e.g. gain or loss. |
| Disease | A cancer type concept with its primary coding and mappings embedded. |
| Document | A source document. Publisher, company, drug names, dates, and status are extensions; urls are plain strings. |
| Extension | A GKS Core extension: a name/value pair for information the underlying specification does not directly support. value may be any JSON type. |
| FunctionConsequence | The functional consequence of a variant, with its primary coding embedded. |
| Gene | A gene concept. Standalone genes carry the gene's sequence locations in extensions; genes embedded in a biomarker have extensions stripped ($defs/Gene without extensions). |
| Indication | Regulatory approval text and its source, with contributions and documents embedded. Root type Indication with one subtype per organization, selected by the id prefix ind:{org}:. status is an extension; HSE indications additionally carry reimbursement_scheme and reimbursement_comment extensions. |
| Mapping | A concept mapping as stored in a mappings file: a coding plus a SKOS relation, with the join record's id. Embedded in concepts as ConceptMapping (no id). |
| Proposition | A VariantTherapeuticResponseProposition. Because Cat-VRS does not yet support sets of categorical variants, subjectVariant is a placeholder and the biomarker criteria are held in the biomarkers extension. |
| SequenceLocation | A VRS SequenceLocation with its SequenceReference embedded. |
| SequenceReference | A VRS SequenceReference: a reference sequence (protein, transcript, or chromosome). |
| Statement | A knowledge claim, with contributions, documents, proposition, and strength embedded. status and the underlying indication are extensions. |
| Strength | The category of evidence supporting a statement, with its primary coding embedded. |
| Therapy | A therapeutic agent concept with its primary coding and mappings embedded. |
| TherapyGroup | A set of therapies administered together, with each therapy embedded. |