Skip to content

SequenceLocation

Dereferenced schema · Source · Referenced version

A VRS SequenceLocation with its SequenceReference embedded.

Fields

Field Type Required Description
id string matching ^ga4gh:SL.[A-Za-z0-9_-]{32}$ yes
type always SequenceLocation yes
name string or null yes
aliases array of string yes
description string yes
digest string yes
sequenceReference SequenceReference yes
start integer at least 0 yes
end integer at least 0 yes
sequence string or null yes

JSON Schema

Full JSON Schema
{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://moalmanac.org/schemas/dereferenced/sequence_locations.schema.json",
  "title": "SequenceLocation",
  "description": "A VRS SequenceLocation with its SequenceReference embedded.",
  "type": "object",
  "properties": {
    "id": {
      "type": "string",
      "pattern": "^ga4gh:SL\\.[A-Za-z0-9_-]{32}$"
    },
    "type": {
      "const": "SequenceLocation"
    },
    "name": {
      "type": [
        "string",
        "null"
      ]
    },
    "aliases": {
      "type": "array",
      "items": {
        "type": "string"
      }
    },
    "description": {
      "type": "string"
    },
    "digest": {
      "type": "string"
    },
    "sequenceReference": {
      "$ref": "sequence_references.schema.json"
    },
    "start": {
      "type": "integer",
      "minimum": 0
    },
    "end": {
      "type": "integer",
      "minimum": 0
    },
    "sequence": {
      "type": [
        "string",
        "null"
      ]
    }
  },
  "required": [
    "id",
    "type",
    "name",
    "aliases",
    "description",
    "digest",
    "sequenceReference",
    "start",
    "end",
    "sequence"
  ],
  "additionalProperties": false
}