SequenceReference¶
Dereferenced schema · Source · Referenced version
A VRS SequenceReference: a reference sequence (protein, transcript, or chromosome).
Fields¶
| Field | Type | Required | Description |
|---|---|---|---|
id |
string matching ^ga4gh:SQ.[A-Za-z0-9_-]{32}$ |
yes | |
type |
always SequenceReference |
yes | |
name |
string | yes | |
aliases |
array of string | yes | |
description |
string | yes | |
moleculeType |
one of protein, mRNA, genomic |
yes | |
refgetAccession |
string matching ^SQ.[A-Za-z0-9_-]{32}$ |
yes | |
residueAlphabet |
one of aa, na |
yes |
JSON Schema¶
Full JSON Schema
{
"$schema": "https://json-schema.org/draft/2020-12/schema",
"$id": "https://moalmanac.org/schemas/dereferenced/sequence_references.schema.json",
"title": "SequenceReference",
"description": "A VRS SequenceReference: a reference sequence (protein, transcript, or chromosome).",
"type": "object",
"properties": {
"id": {
"type": "string",
"pattern": "^ga4gh:SQ\\.[A-Za-z0-9_-]{32}$"
},
"type": {
"const": "SequenceReference"
},
"name": {
"type": "string"
},
"aliases": {
"type": "array",
"items": {
"type": "string"
}
},
"description": {
"type": "string"
},
"moleculeType": {
"enum": [
"protein",
"mRNA",
"genomic"
]
},
"refgetAccession": {
"type": "string",
"pattern": "^SQ\\.[A-Za-z0-9_-]{32}$"
},
"residueAlphabet": {
"enum": [
"aa",
"na"
]
}
},
"required": [
"id",
"type",
"name",
"aliases",
"description",
"moleculeType",
"refgetAccession",
"residueAlphabet"
],
"additionalProperties": false
}